PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01684.40
Common NameJCGZ_09298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 305aa    MW: 34805.1 Da    PI: 6.0611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01684.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482.1e-15222247126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yGd C+FaHg
  Jcr4S01684.40 222 FKTELCNKWQETGTCPYGDHCQFAHG 247
                    79***********************9 PP

2zf-CCCH215.8e-07260285126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykte Cr  +++ +C+yG rC+F H+
  Jcr4S01684.40 260 YKTEVCRMVLAGDICPYGHRCHFRHV 285
                    9**********55**********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-19216254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11218253IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-10221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.652221249IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12222247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8255289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-11255288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169259287IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5259286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MESDFSSTGN DEFVVSTKSE YYSPNDVDFT SIFLPKASQS ITPSMDSRFV MQHQDLINRI  60
ALCLTRLREA AREVESLRLE NTALRSVNSE LNNHLSLLIQ ASVQEHCLPS DYNTTPLEVF  120
NDFRNLRFTG GDEGEELRED ESPTSVMEVQ PADTSERTTL PKSISVRSNG YLKTIQAGAT  180
KTRGVTRPKT ESPLNATQKV YVRGGKKEEE PLELEVYNQG MFKTELCNKW QETGTCPYGD  240
HCQFAHGLEE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC HFRHVLTEQE RFMGDIKSRS  300
IKLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-22222284466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075708.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F57e-90C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A067KRU60.0A0A067KRU6_JATCU; Uncharacterized protein
STRINGVIT_01s0011g04260.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-85C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]